What is the compression and have you done a leak down test? If it's low then the carbs will require enrichment to compensate.
A half-hearted hack you can do to verify if it's too lean is to just stuff the air filter with a few shop rags and see if it magically runs better. You can also ride with half choke up. I will say that 5 minutes is not sufficient to remove the dead mid-range with choke all the way down. It's about 10 minutes. Depends on how much you're driving in that time. Sometimes it's sooner if you're cruising.
If it's idling OK very likely sync is close to where it needs to be and you should be able to set mixture screws now. Honestly, if it's idling OK and after full warmup you blip the throttles and it returns to idle just fine then you can leave it be for right now. The screws not being exactly in the same spot is fine.
These are non-adjustable floats, however you can change them to the earlier years with the adjustable floats on this model. However, hold off on that until you get things dialed in.
Adjust the cam chain as soon as you can. This matters and can affect performance. We went through this problem with
@esh21167 400T where it was overheating and causing funny running after 10 minutes.
It's also possible that the needle jet/jet needle combo is incorrect for your model (aftermarket replacement) and causing the dead spot. If you get a chance sometime you can remove one of the covers while still on the bike and pull the CV piston out and look at the numbers on the needle and let us know.